Conformationally constrained PNA analogues: structural evolution toward DNA/RNA binding selectivity

Since its discovery 12 years ago, aminoethylglycyl peptide nucleic acid (aeg-PNA) has emerged as one of the successful DNA mimics for potential therapeutic and diagnostic applications. An important requisite for in vivo applications that has received inadequate attention is engineering PNA analogues for able discrimination between DNA and RNA as binding targets. Our approach toward this aim is based on structural preorganization of the backbone to hybridization-competent conformations to impart binding selectivity. This strategy has allowed us to design locked PNAs to achieve specific hybridization with DNA or RNA with aims to increase the binding strength without losing the binding specificity. This Account presents results of our rationale in design of different conformationally constrained PNA analogues, their synthesis, and evaluation of hybridization specificities.     

Microstructure and Dielectric Characteristics of (PbxBa0.5−xSr0.5)TiO3 Ceramics

Microstructural and dielectric properties of the Pb _x Ba _0.5__x —Sr_0.5TiO₃ system have been studied. It is found that this system forms a solid solution in the entire composition range (0.0≤ x ≤0.5) and is cubic for the x = 0, 0.1, and 0.2 compositions and tetragonal for other compositions. Measurements of the dielectric constant as a function of temperature reveal that this material is ferroelectric at room temperature for the x > 0.2 compositions and has a broad paraelectric-ferroelectric transition region. No shift in the dielectric maxima was noted; however, there is a slight spread in the dielectric constant with frequency for the x = 0.4 composition. A quantitative model to mathematically analyze the effect of composition fluctuations on the dielectric broadening for a ternary system is presented. Transmission electron microscopic studies reveal the presence of 90° ferroelectric domains oriented along the {01     } planes for the x = 0.3 and 0.4 compositions.     

A Comparative Study of Methods of Clock Ensemble Development

An ensemble of clocks is the first step towards the realization of a timescale. A timescale is the estimate of phase and frequency of the “perfect” clock derived from the phase and frequency of the clocks which participate in the ensemble. Three methods of clock ensembling viz. a Kalman filter based formulation, a multi-scale ensemble timescale based on minimizing the ADEV and an ensemble using artificial neural networks have been discussed in this paper and a comparative study has been performed.     

The role of tackifiers on the auto-adhesion behavior of EPDM rubber

The article describes the effect of hydrocarbon (HC) and coumarone-indene (CI) resin tackifiers on autohesion behavior of ethylene propylene diene polymethylene (EPDM) rubber. The viscoelastic behavior and nature of compatibility of EPDM/tackifier blends were studied by means of dynamic mechanical analysis. Furthermore, scanning electron microscopy and atomic force microscopy were used to understand the compatibility of the EPDM/tackifier blends. The HC tackifying resin modified the viscoelastic properties of the EPDM rubber in such a way that it behaved as a plasticizer at lower frequency by reducing the storage modulus and filler at higher frequency by increasing the storage modulus. On the contrary, the CI modified EPDM rubber did not show similar behavior; the modulus enhanced throughout the entire frequency range. The viscosity of the matrix was found to be highly governed by the compatibility as well as amount of tackifier present in the blend. In order to explain the tack behavior, several tack governing factors such as green strength, creep compliance, entanglement molecular weight, relaxation time, self-diffusion coefficient, and monomer friction coefficient (ζ₀) were investigated. The tack strength increased with HC tackifier loading up to 24 parts per hundred grams of rubber (phr), beyond which a plateau region was observed. A maximum of 196% improvement was observed at 24 phr HC loaded sample as compared to gum EPDM rubber devoid of tackifier. Conversely, there was a marginal improvement of tack strength (36%) up to 8 phr loading for the system containing CI, beyond which it dropped.     

Analysis of Livelihood Asset Pentagon to Assess the Performance of Irrigation Systems

Abstract

There has been a growing consciousness for the need for a framework that is holistic and comprehensive in the assessment of irrigation system performance. This paper presents the results of statistical tests conducted on the analytical framework developed in Part 1 of the paper to examine whether or not it addresses the important issues of system performance. Information collected from two farmer-managed irrigation systems of Nepal was used to test the validity of the framework. The empirical evidence shows that the framework is valid in identifying and fitting conventionally-overlooked livelihood assets and that it demonstrates differences in farm households' access to these assets resulting in varying performance of irrigation systems.     

A Simple and Effective Modification of PCBM for Use as an Electron Acceptor in Efficient Bulk Heterojunction Solar Cells

[6,6]‐phenyl‐C‐61‐butyric acid methyl ester (PCBM) and poly(3‐hexylthiophene) (P3HT) are the most widely used acceptor and donor materials, respectively, in polymer solar cells (PSCs). However, the low LUMO (lowest unoccupied molecular orbital) energy level of PCBM limits the open circuit voltage (V_oc) of the PSCs based on P3HT. Herein a simple, low‐cost and effective approach of modifying PCBM and improving its absorption is reported which can be extended to all fullerene derivatives with an ester structure. In particular, PCBM is hydrolyzed to carboxylic acid and then converted to the corresponding carbonyl chloride. The latter is condensed with 4‐nitro‐4’‐hydroxy‐α‐cyanostilbene to afford the modified fullerene F . It is more soluble than PCBM in common organic solvents due to the increase of the organic moiety. Both solutions and thin films of F show stronger absorption than PCBM in the range of 250–900 nm. The electrochemical properties and electronic energy levels of F and PCBM are measured by cyclic voltammetry. The LUMO energy level of F is 0.25 eV higher than that of PCBM. The PSCs based on P3HT with F as an acceptor shows a higher V_oc of 0.86 V and a short circuit current (J_sc) of 8.5 mA cm^?2, resulting in a power conversion efficiency (PCE) of 4.23%, while the PSC based on P3HT:PCBM shows a PCE of about 2.93% under the same conditions. The results indicate that the modified PCBM, i.e., F , is an excellent acceptor for PSC based on bulk heterojunction active layers. A maximum overall PCE of 5.25% is achieved with the PSC based on the P3HT: F blend deposited from a mixture of solvents (chloroform/acetone) and subsequent thermal annealing at 120 °C.     

Ultra Low-Dose Radiation: Stress Responses and Impacts Using Rice as a Grass Model

We report molecular changes in leaves of rice plants (Oryza sativa L. - reference crop plant and grass model) exposed to ultra low-dose ionizing radiation, first using contaminated soil from the exclusion zone around Chernobyl reactor site. Results revealed induction of stress-related marker genes (Northern blot) and secondary metabolites (LC-MS/MS) in irradiated leaf segments over appropriate control. Second, employing the same in vitro model system, we replicated results of the first experiment using in-house fabricated sources of ultra low-dose gamma (γ) rays and selected marker genes by RT-PCR. Results suggest the usefulness of the rice model in studying ultra low-dose radiation response/s.     

Nano-mixing of dipyridamole drug and excipient nanoparticles by sonication in liquid CO2

Nanoparticles (about 200 nm thick and 600–12000 nm long flakes) of dipyridamole, a poorly water-soluble anti-thrombosis drug, are produced by supercritical antisolvent solvent with enhanced mass transfer method. Applicability of sonication in liquid CO₂ for mixing of drug and excipient nanoparticles is demonstrated for several binary mixtures of drug and excipient. The drug particles are mixed with three different excipients: silica nanoparticles, lactose microparticles, and polyvinylpyrrolidone nanoparticles. To intimately mix at nanoscale, macro mixtures of dipyridamole and excipient particles are sonicated in liquid carbon dioxide. The effects of ultrasonic energy, amplitude, and component weight ratio are studied for the binary mixtures. Characterization of mixing is done using several methods. Scanning electron microscopy is used as a primary method for microscopic analysis. Two macroscopic effects, drug dissolution and blend homogeneity (relative standard deviation), are used to characterize mixing quality of drug/lactose mixture. Results of drug dissolution and blend homogeneity show effectiveness of the proposed mixing method for fine size particles. Material handling properties of drug/silica and lactose/silica mixtures were examined. Upon mixing, the handling properties are significantly improved as measured by compressibility index and Hausner ratio. Liquid CO₂ offers an environmentally benign media for mixing. In addition, the mixture obtained does not contain any residual solvent as compared to the sonication in organic liquids. Upon depressurization, CO₂ is easily removed from the mixture providing a facile recovery of the product.